Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015919839.1_cds_XP_016469048.1_61625
CDS Infomation

[gene=LOC107791476] [db_xref=GeneID:107791476] [protein=E3 ubiquitin-protein ligase RFWD3 isoform X3] [protein_id=XP_016469048.1] [location=join(134108..134628,138051..138126,138223..138312,138384..138428,139297..139377,140095..140158,140262..140320,140801..140911,141001..141137,141294..141333,142560..142622,143052..143249)] [gbkey=CDS]
Sequence

ATGGCCGATGACGCCGACCCGGATTACGAGAGATTCCTCCACCTAATCGCCGTCGGCGGC
GACGAGGGTGAACTGGCCGACGACGTCGTCTTTTTAGAAGATGAAGCAGAGTATGAGGAA
GACGAAGAGGAAGAAGAGACAGAAGAAGACGAAGAAGAAGAAGAACAACAAGAAGAAGAC
GAAGAAGAAGAAGAAGAAGAGGAGGAGGACGAAGATATTGGAAATGAAGAGTCGAGTACT
GGAAGGACGACATTGCGTACGGTTTTGTACGGGAATCGTGGTGGTGCAGCAATTTCATCT
CAACAGCGGGCGATTAATGCTGTGAATTTCGATAATTCCGCTATGGAAAGTGAAGATGCT
ACGACGGGGACCAAAGGCGGGGAAAAGGCGTCGCAAGATGTTGATAAGGAAGAAGACGGT
GGAGGCGAAGGAGAAGGGGAGTGGAATCGAAGTGAGATTGAAGGTTTGTTTTGCCCTATT
TGCATGGAAGCTTGGACCAACGACGGCGACCACCAAATCTGCTGCCTTCCTTGTGGGCAT
ATATATGGTTTGTCATGTATCAAGAAGTGGTTGCAACAAAAAGGAAGTTTAGGAAAGTGC
CCTCAATGTAATAAGAAATGCACATTGAAGGGTGTCCGAGTGCTTTATGCTTCTCGTCTT
CATGCTGTTGATGAAGAGCTTCAAAAGAAAATCCGGTCTCTTGAATCTAGATGTTTTTCT
CTTGAAAAAGAGTGCAGTGATTGGTGTAAGAAAGAAGTTGAGTGGAGGAGGAGAGAAGCC
GAGTTGCATAAGCAAGTGGGGCACCTCAAAGAGAGAATAACTTGTGTAGAGGGCTCACAA
AGCGAGATGCAGTGCAGGTCATCTGGACGCATTTTTGGGCGCAATATTGACTCCAAATTG
GGAAGACGTGAATATGCGAACGCTTTTGTTTTACAGAAAGAGTTTCAGATTGATGGCGCT
CGCCTATTTGATGTGGATAGTAACGGTGAGAATTTGATGATTGCCAGAAGGCTCGCTGGA
ATGGGAGGGCAGCATATGCTTACCAAAATCAGCCTATTACCTCCGCATGAAAGAGAAGAC
ATTCTGCTTCCTGCGAGCATGAAAACTATCAAGGACTTGCATGTTTCTCCTCATGAAAGA
GTCATACTCTTGGCTTCCTTAGGGAAGAAGTTGTCAGTTCTTAGTGCTGAAAACAACCAT
ACTGTTCTGACATATGACTTACCGACTGTTCCTTGGTCATGTTCGTGGGATCCCAACAAT
TCACATTACATGTATGCCGGATTACAGAATGGTATGGTTTTGCAGTTTGATGGGCGTCAA
ACTATGAAGCCAGTGGAATGTATGACTGGGTTGACAGGAAATCCTGTTCATACCGTGTGC
TCTCTTTCAGCTGATCCTACACTTGGTGCTGGCGTCAGAAGTGTTCTTTCTGCATCGTCA
GTAGGCTTGTGCCACTGGAACTTTGGTAGCGGTGAAGAAAGGTGA

Peptide Sequence

PEP ID

XP_016469048.1
PEP Infomation

PREDICTED: E3 ubiquitin-protein ligase RFWD3 isoform X3 [Nicotiana tabacum]
Sequence

MADDADPDYERFLHLIAVGGDEGELADDVVFLEDEAEYEEDEEEEETEEDEEEEEQQEED
EEEEEEEEEDEDIGNEESSTGRTTLRTVLYGNRGGAAISSQQRAINAVNFDNSAMESEDA
TTGTKGGEKASQDVDKEEDGGGEGEGEWNRSEIEGLFCPICMEAWTNDGDHQICCLPCGH
IYGLSCIKKWLQQKGSLGKCPQCNKKCTLKGVRVLYASRLHAVDEELQKKIRSLESRCFS
LEKECSDWCKKEVEWRRREAELHKQVGHLKERITCVEGSQSEMQCRSSGRIFGRNIDSKL
GRREYANAFVLQKEFQIDGARLFDVDSNGENLMIARRLAGMGGQHMLTKISLLPPHERED
ILLPASMKTIKDLHVSPHERVILLASLGKKLSVLSAENNHTVLTYDLPTVPWSCSWDPNN
SHYMYAGLQNGMVLQFDGRQTMKPVECMTGLTGNPVHTVCSLSADPTLGAGVRSVLSASS
VGLCHWNFGSGEER

Transcript Sequence

Gene sequence data has not been registered.